SeekDeep
  • Home
  • Installing
    • Mac OS
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    • Vagrant/virtual image (any system)
  • Code
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  • Usages

    • Pipeline
    • extractor/extractorPairedEnd
    • makeSampleDirectories
    • qluster
    • processClusters
    • popClusteringViewer

    • Pipeline Wrapper
    • setupTarAmpAnalysis

    • Utilities
    • genTargetInfoFromGenomes
    • SeekDeep control mixture benchmarking
    • SeekDeep Variant Calling
  • Tutorials

    • Single End
    • Ion Torrent with MIDs

    • Illumina Paired End
    • Paired End No MIDs/Barcodes
    • Paired End With MIDs/Barcodes
  • Misc Info
    • Illumina Paired End Info
  • References
    • versions
    • References

    Contents

    • References

    References

    Hathaway, Nicholas J, Christian M Parobek, Jonathan J Juliano, and Jeffrey A Bailey. 2017. “SeekDeep: Single-Base Resolution de Novo Clustering for Amplicon Deep Sequencing.” Nucleic Acids Res. 46 (4): e21.
    Source Code
    ---
    nocite: |
      @Hathaway2017-ib
    ---
    
    ```{r setup, echo=FALSE, message=FALSE}
    source("common.R")
    ```
    
    # References  
    
    
    ::: {#refs}
    
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